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"tune,tskrrHomogeneous-method" ] }, { "page": "update", "title": "Update a tskrr object with a new lambda", "topics": [ "update", "update,tskrrHeterogeneous-method", "update,tskrrHomogeneous-method" ] }, { "page": "valid_dimensions", "title": "Functions to check matrices", "topics": [ "is_square", "valid_dimensions" ] }, { "page": "valid_labels", "title": "Test the correctness of the labels.", "topics": [ "valid_labels" ] }, { "page": "weights", "title": "Extract weights from a tskrr model", "topics": [ "weights", "weights,tskrrHeterogeneous-method", "weights,tskrrHomogeneous-method" ] } ], "_readme": "https://github.com/centerforstatistics-ugent/xnet/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "Preparation_example_data.Rmd", "filename": "Preparation_example_data.html", "title": "Preparation of the example data", "author": "Joris Meys", "engine": "knitr::rmarkdown", "headings": [ "Obtaining the original data", "Processing the drug similarities", "Obtaining the data", "Calculating the similarities" ], "created": "2018-09-17 15:58:47", "modified": "2019-12-17 14:23:52", "commits": 3 }, { "source": "xnet_ShortIntroduction.Rmd", "filename": "xnet_ShortIntroduction.html", "title": "A short introduction to cross-network analysis with xnet", "author": "Meys Joris", "engine": "knitr::rmarkdown", "headings": [ "Concepts and terms used in the package.", "Notation and naming of networks in the package", "Data in the package", "Homogeneous networks", "Heterogeneous networks", "Fitting a two-step kernel ridge regression", "Heterogeneous network", "Homogeneous network", "Extracting parameters from a trained model.", "Information on the fit of the model", "Performing leave-one-out cross-validation", "Settings for LOO", "Use LOO in other functions", "Looking at model output", "Tuning a model to find the best lambda.", "Predicting new values", "Predict for new K-nodes", "Predict for new G-nodes", "Predict for new K and G nodes", "Impute new values based on a tskrr model" ], "created": "2019-04-04 16:05:49", "modified": "2019-12-17 12:01:15", "commits": 5 }, { "source": "xnet_ClassStructure.Rmd", "filename": "xnet_ClassStructure.html", "title": "S4 class structure of the xnet package", "author": "Meys Joris", "engine": "knitr::rmarkdown", "headings": [ "Virtual classes", "Actual classes", "Inheritance from tskrr", "Slots defined by tskrrHomogeneous", "Slots defined by tskrrHeterogeneous", "Inheritance from tskrrTune", "Inheritance from tskrrImpute" ], "created": "2019-03-28 13:49:06", "modified": "2019-12-13 07:54:40", "commits": 4 } ], "_score": 5.296665190261531, "_indexed": true, "_nocasepkg": "xnet", "_universes": [ "centerforstatistics-ugent", "jofam" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.11", "date": "2026-05-18T06:36:35.000Z", "distro": "noble", "commit": "4093905ae81281b6cf81c6a3425bdaf884e78fb4", "fileid": "7901412b0edc50581e1312a6f15336b1a0457ee8550dfb03b2b9e0e1204688b4", "status": "success", "check": 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