Package: pim 2.0.3

Joris Meys

pim: Fit Probabilistic Index Models

Fit a probabilistic index model as described in Thas et al, 2012: <doi:10.1111/j.1467-9868.2011.01020.x>. The interface to the modeling function has changed in this new version. The old version is still available at R-Forge.

Authors:Joris Meys [aut, cre], Jan De Neve [aut], Nick Sabbe [aut], Gustavo Guimaraes de Castro Amorim [aut]

pim_2.0.3.tar.gz
pim_2.0.3.zip(r-4.7)pim_2.0.3.zip(r-4.6)pim_2.0.3.zip(r-4.5)
pim_2.0.3.tgz(r-4.6-any)pim_2.0.3.tgz(r-4.5-any)
pim_2.0.3.tar.gz(r-4.7-any)pim_2.0.3.tar.gz(r-4.6-any)
pim_2.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pim/json (API)

# Install 'pim' in R:

install.packages('pim', repos = c('https://centerforstatistics-ugent.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/centerforstatistics-ugent/pim/issues

Datasets:

DysData - This is the Dysphagia data
EngelData - This is the engel data
FEVData - This is the Childhood respiratory disease data
MHData - This is the Mental health data
SUData - This is the Surgical unit data

On CRAN:

modelling statistics

5.41 score 11 stars 47 scripts 280 downloads 41 exports 3 dependencies

Last updated from:b1c13668d7. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	125
source / vignettes	OK	154
linux-release-x86_64	NOTE	121
macos-release-arm64	NOTE	159
macos-oldrel-arm64	NOTE	171
windows-devel	NOTE	101
windows-release	NOTE	77
windows-oldrel	NOTE	80
wasm-release	OK	100

Exports:add.poset as.data.frame as.matrix classes coef compare confint create.poset estimator.BB estimator.glm estimator.nleqslv fitted formula has.intercept has.specials is.complete keep.data L lhs link model model.matrix new.pim.env new.pim.formula new.pim.poset nobs P penv pim pim.fit PO poset PP print R response sandwich.vcov score.vcov summary terms vcov

Dependencies:BB nleqslv quadprog

An R package for fitting probabilistic index models

Introduction | Standard PIM | More complicated examples | Relationship to rank tests | Remarks

Rendered frompim.Rnwusingutils::Sweave

Last update: 2017-08-24
Started: 2017-08-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Probabilistic Index Models	pim-package
Create a poset function	.make.posfun
Add a poset to a pim.environment object	add.poset add.poset,pim.environment-method
Convert a pim.environment to a data frame	as.data.frame as.data.frame,pim.environment-method
Convert a pim.summary object to a matrix	as.matrix as.matrix,pim-method as.matrix,pim.summary-method as.matrix.pim.summary
Extract information from pim.environment and pim.poset objects	classes classes,pim.environment-method compare compare,pim.environment-method compare,pim.poset-method link link,pim-method link,pim.summary-method model model,pim-method model,pim.summary-method names names,pim.environment-method names,pim.poset-method
Extract the coefficients from a pim or pim.summary object	coef coef,pim-method coef,pim.summary-method
Calculate Wald confidence intervals around the coefficients of a PIM	confint confint,pim-method confint,pim.summary-method confint.pim confint.pim.summary
Create a poset	create.poset
Create a score function for use in a pim.	CreateScoreFun
This is the Dysphagia data	DysData
This is the engel data	EngelData
Estimator functions for probabilistic index models	estimator.BB estimator.glm estimator.nleqslv estimators
Extract method for pim.summary objects	Extract.pim.summary [,pim.summary-method
This is the Childhood respiratory disease data	FEVData
Extract the formula from a pim or pim.formula object	formula formula,pim-method formula,pim.formula-method
Check whether formula has an explicit intercept	has.intercept has.intercept,character-method has.intercept,formula-method has.intercept,pim-method has.intercept,pim.formula-method has.intercept,terms-method
Extract information from a pim.formula object	has.specials has.specials,pim.formula-method lhs lhs, lhs,pim.formula-method terms terms, terms,pim.formula-method
Check whether a pim environment is complete	is.complete
Specify the left hand and right hand side of an expression used in pims	L PP R
This is the Mental health data	MHData
Create a model matrix for a probabilistic index model	model.matrix model.matrix,pim-method model.matrix,pim.formula-method model.matrix.pim model.matrix.pim.formula
Create an object of class pim	new.pim
Constructor for a pim.environment	new.pim.env new.pim.env,ANY-method new.pim.env,data.frame-method new.pim.env,environment-method new.pim.env,list-method new.pim.env,missing-method
Constructor for pim.formula	new.pim.formula new.pim.formula,formula,ANY-method new.pim.formula,formula,pim.environment-method
Create a pim.poset environment	new.pim.poset new.pim.poset,character,numeric-method new.pim.poset,list,missing-method new.pim.poset,list,numeric-method new.pim.poset,matrix,missing-method new.pim.poset,matrix,numeric-method new.pim.poset,missing,numeric-method
Extract the number of observations	nobs,data.frame-method nobs,matrix-method nobs,pim.environment-method nobs,pim.poset-method
Probability function	P PO
Extract a pim environment from a model or formula	penv penv,pim-method penv,pim.formula-method
Fitting a Probabilistic Index Model	pim
Class pim	pim-class
Getters for slots of a pim object	fitted fitted,pim-method getters-pim keep.data pim-getters
The pim.environment class	pim.environment pim.environment-class
Fitter function for a probabilistic index model	pim.fit
Class pim.formula	pim.formula pim.formula-class
The pim.poset class	pim.poset pim.poset-class
Class pim.summary	pim.summary pim.summary-class
The data contained in the pim package	pimdata
Extract the poset as a matrix or list	poset poset,environment-method poset,pim-method poset,pim.environment-method poset,pim.formula-method poset,pim.poset-method
Print methods for the different object types	print print,pim-method print,pim.environment-method print,pim.formula-method print,pim.poset-method
Extract response from a pim.formula or a pim object	response response,pim-method response,pim.formula-method
Pseudo-observation variance sandwich estimator	sandwich.estimator score.estimator
This is the Surgical unit data	SUData
The summary function for the pim class	summary summary,pim-method summary.pim
Methods for vcov	vcov vcov,list-method vcov,pim-method
vcov estimators for pim	sandwich.vcov score.vcov vcov.estimators
Internal functions for vcov estimation	U.sandwich U.score vcov.internal